Variants

Pompe disease GAA variant database

Variants

Link to Pubmed

PubMed

Location

intron 1A

DNA nomenclature

c.-113+2T>C

RNA nomenclature

r.spl

Protein nomenclature

p.?

Type of variant DNA

substitution

Type of variant RNA

substitution/ splicing (splice donor site)

Type of variant Protein

No category

ACMG classification

Pathogenic

Predicted severity

Very severe

Phenotype with null allele

Unknown (disease-associated)

CRIM status

Unknown

MAF

MAF not reported

RS number

Biochemical evidence of pathogenicity

affects splicing on exon 1 in minigene

Splicing and translation prediction

loss of exon 1A splice donor site

Biochemical evidence of CRIM status

Prediction of CRIM status

unknown

Missense prediction (Mutation Taster)

Missense prediction (SIFT)

Missense prediction (Align GVGD)

Number of patients

The Pompe disease GAA variant database represents an effort to collect all known variants in the GAA gene and is maintained and provide by the Pompe center, Erasmus MC.

We kindly ask you to reference the following article if you use this database for research purposes:
Niño, MY, in 't Groen, SL, Bergsma, AJ, et al. Extension of the Pompe mutation database by linking disease‐associated variants to clinical severity. Human Mutation. 2019; 40: 1954–1967. https://doi.org/10.1002/humu.23854

www.pompecenter.nl